PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08590.3
Common NameLR48_Vigan01g268700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 190aa    MW: 21235.5 Da    PI: 9.3854
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08590.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.3e-162776255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +grW AeI+d s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Vang11g08590.3 27 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 76
                    789******.7*********42...36**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.60E-312685No hitNo description
PROSITE profilePS5103219.732784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-272785IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-192784IPR016177DNA-binding domain
SMARTSM003801.7E-312790IPR001471AP2/ERF domain
PRINTSPR003674.8E-72839IPR001471AP2/ERF domain
PfamPF008474.0E-102876IPR001471AP2/ERF domain
PRINTSPR003674.8E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
LMAIEIDKPY EKRVMKIPKV GKKIEKKFLG VRQRPSGRWI AEIKDSSQKL RLWLGTFDKA  60
EEAALAYDCA ARLLRGRNAK TNFPNPGIMN THEEDYSILG KNPRSYQLLK HAVMKNHALS  120
ASLYSTFMPS WKNQIMLRDE HDTLVEETIV CSIPEQGSAC CGISFGSSKV YSSVVVAPSF  180
SVSSHDETP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-142684160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-142684463ATERF1
3gcc_A3e-142684463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155177.11e-124hypothetical protein PHAVU_003G180000g
TrEMBLA0A0L9TRL31e-142A0A0L9TRL3_PHAAN; Uncharacterized protein
STRINGGLYMA05G07690.21e-106(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-16related to AP2 11
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]